Managing and querying gene expression data using Curray.

Managing and querying gene expression data using Curray.

BACKGROUND
In principle, the gene expression data can be seen as providing only a three-valued expression profile relative biological element target experiment at hand. Although complicated, collect expression profile does not pose much of a challenge from the standpoint of the query language. What is interesting is how the expression profiles are used to tease out information from a vast array of repository information that ascribe meaning to the expression profile.

Because of the inherent experimenting explanation of certain functions, much the same way as the query in the database, developing a query system for gene expression data seems futile. Instead, develop tools and techniques to support the individual tasks have been considered prudent in contemporary research.


RESULTS
We propose gene expression data management and query system that is capable of supporting the pre-expression, expression and analysis of post-expression levels and reducing the impedance mismatch between the system analysis. To this end, we propose a new, platform-independent and general purpose query language called curray, for a query language Custom microarrays, to support the online data expression analysis using distributed resources.

It includes features for designing pipelines using expression analysis at the conceptual level language constructs. The ability to include user function defined as a class language feature facilitates the support limited analysis and eliminates the limitations of language. We show that this curray declarative and extensible agile feature enables the modeling of flexible and space for customization.


CONCLUSION
The development proposed in this article allows the user to see their expression data from a conceptual standpoint – experiment, probe, expression, mapping, etc. at various levels of representation and is independent of the underlying chip technology. It also allows transparent roll-up and drill-down along a hierarchical representation of the raw data to standard as MIAME and MAGE-ML uses linguistic construction. Curray also allows integration with distributed web resources through its LifeDB system which is a part.

 Managing and querying gene expression data using Curray.
Managing and querying gene expression data using Curray.

EMERALD contribution of the project to assess and improve the quality of microarray data.

While the minimum information about the trial microarray (MIAME) standards have helped to increase the value of microarray data deposited into the general database as ArrayExpress and Gene Expression Omnibus (GEO), limited means have been provided to assess the quality of this data or to identify the procedures used to normalize and transforms raw data.

The EMERALD FP6 Coordination Action is designed to provide an approach to assess and improve the overall quality of microarray data and to disseminate to the public microarray approach through a comprehensive series of workshops, tutorials, and symposia. Tools developed to assess the quality of data used to demonstrate how low-quality data deletion can increase the power of statistical analysis and facilitate the analysis of multiple microarray data sets together.

Human Serum IgM detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80170-M 1 kit
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Human Serum IgG3 detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80170-G3 1 kit
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Human Serum IgG4 detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

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Horse Anti-Cobra (Naja Naja) Antibody ELISA Kit, 96 tests, Quantitative, 96 tests

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ER Enrichment Kit (20 tests)

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3-Nitrotyrosine ELISA Kit, 96 tests, Quantitative

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Glucagon Like Peptide 1, Active (GLP-1, 7-36/7-37) ELISA kit, 96 tests, Quantitative

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Human Primary Antibody (IgA) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80170-A 1 kit
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Human Primary Antibody (IgE) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80170-E 1 kit
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Human C1q ELISA Kit, 96 tests

2940-10 1 kit
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Lysosome Isolation Kit (20 tests)

P534 - Ask for price

Human Primary Antibody (IgG1) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80170-G1 1 kit
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Human Primary Antibody (IgG2) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80170-G2 1 kit
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Mouse Primary Antibody (IgG1-3) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80150-G 1 kit
EUR 781.2

Rat Rena-strip Kit, 25 tests

R-RENA-LF-025 25 tests
EUR 617.3
Description: Rat Rena-strip Kit could be used both as qualitative or quantitative (with reader) for a detection of KIM-1 in urine samples from rats. The procedure takes about 25 minutes.

Human Aquaporin-3 ELISA Kit, 96 tests, quantitative

9555 1 kit
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Rat Serum IgG detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80155-G 1 kit
EUR 781.2

Rat Serum IgM detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80155-M 1 kit
EUR 781.2

Human Rena-strip Kit, 25 tests

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EUR 617.3
Description: Human Rena-strip Kit could be used both as qualitative or quantitative (with reader) for a detection of KIM-1 in urine samples from human. The procedure takes about 25 minutes.

Glutathione Reductase Assay Kit (100 tests)

0805004 100 tests
EUR 334.56
Description: Please contact Gentaur in order to receive the datasheet of the product.

Mouse Serum IgM detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80150-M 1 kit
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Pig Interleukin-3 (IL-3) ELISA Kit, 96 tests, Quantitative

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Hygiena UltraSnap Surface ATP Tests

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Nori® Human Galectin-3 POCT Systems-25 Tests

GR220020 25 Tests
EUR 618

Mouse Aquaporin-3 (AQP-3) ELISA Kit, 96 tests, Quantitative

9195 1 Kit
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BCA Optima Protein Assay kit with Pre-diluted BSA standards and BCA Strip plates (5), 500 tests

BCAO-521 1 kit
EUR 270

Mouse Serum IgG3 detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80150-G3 1 kit
EUR 781.2

Nori® Canine Galectin-3 POCT Systems-25 Tests

GR221020 25 Tests
EUR 618

Nori® Feline Galectin-3 POCT Systems-25 Tests

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Nori® Equine Galectin-3 POCT Systems-25 Tests

GR223020 25 Tests
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Mouse Neurotrophin 3 (NT-3) ELISA Kit, 96 tests, Quantitative

9210 1 Kit
EUR 927.6

Arylesterase/Paraoxonase Assay Kit (200 tests)

0801199 200 tests
EUR 517

Arylesterase/Paraoxonase Assay Kit (200 tests)

801199 200 tests
EUR 492

Human Neurotrophin-3 (NT-3) ELISA Kit, 96 tests, Quantitative

9690 1 Kit
EUR 927.6

Free Chlorine Reagent set (25 tests)

HI-701-25 PK25
EUR 10.8

Goat Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80165 1 Kit
EUR 781.2

Pig Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80186 1 kit
EUR 781.2

Chicken Interleukin-3 (IL-3) ELISA Kit, 96 tests, Quantitative

10700 1 Kit
EUR 927.6

Total Chlorine Reagent set (25 tests)

HI-711-25 PK25
EUR 15.6

Sheep Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80166 1 Kit
EUR 781.2

Human Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80170 1 Kit
EUR 781.2

Donkey Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80172 1 Kit
EUR 781.2

Horse Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80173 1 Kit
EUR 781.2

Monkey Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80175 1 Kit
EUR 781.2

Bovine Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80185 1 kit
EUR 781.2

Turkey Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80187 1 kit
EUR 781.2

Ferret Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80188 1 kit
EUR 781.2

Chicken Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80176 1 kit
EUR 781.2

Canine Complement 3 (C3) ELISA Kit, 96 tests, Quantitative

10455 1 Kit
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Protein-A ELISA Kit, 480 tests, Quantitative

800-110-PRA-5 1 pk
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Bisphenol A (BPA) ELISA kit, 96 tests

EE-210010 1 Kit
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G. Pig Primary Antibody (A+G+M) detection and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80171 1 Kit
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Mouse Primary Antibody (IgA) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80150-A 1 kit
EUR 781.2

Mouse Primary Antibody (IgE) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80150-E 1 kit
EUR 781.2

Rat Primary Antibody (IgA) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80155-A 1 kit
EUR 781.2

Rat Primary Antibody (IgE) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80155-E 1 kit
EUR 781.2

Human beta-Defensin-3 (BD-3) ELISA Kit, 96 tests, Quantitative

100-260-BD3 1 kit
EUR 1074

Lactate ELISA Kit, 96 tests, Quantitative

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Golgi Apparatus Enrichment Kit (20 tests)

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Salmonella Rapid Detection Kit, 20 tests

STLF-020 20 tests
EUR 287.9
Description: The Salmonella Rapid Detection Kit is a quick and reliable kit for obtaining qualitative results for about 20 minutes. It detects all serotypes of Salmonella in food samples.

Human Arginine (Arg) ELISA Kit, 96 tests

100-330-ARG 1 kit
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Total Glutathione Peroxidase Assay Kit (100 tests)

0805002 100 tests
EUR 409.44
Description: Please contact Gentaur in order to receive the datasheet of the product.

Oxytocin ELISA Kit, 96 tests, Quantitative

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Rat C3 ELISA Kit, 96 tests, Quantitative

6230 1 kit
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Mouse Primary Antibody (IgG1) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80150-G1 1 kit
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Mouse Primary Antibody (IgG2a) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80150-G2a 1 kit
EUR 781.2

Mouse Primary Antibody (IgG2b) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80150-G2b 1 kit
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Rat IgA ELISA kit 96 tests, Quantitative

6410-10 1 kit
EUR 607.2

Rat IgG ELISA Kit, 96 tests, Quantitative

6420 1 kit
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Rat IgE ELISA Kit, 96 tests, Quantitative

6470 1 kit
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Rat IgM ELISA Kit, 96 tests, Quantitative

6480 1 Kit
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Cat IgG ELISA Kit, 96 tests, Quantitative

300-100-CGG 1 kit
EUR 854.4

Cat IgM ELISA kit 96 tests, Quantitative

300-170-CGM 1 kit
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Cat IgA ELISA Kit, 96 tests, Quantitative

300-180-CGA 1 kit
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Cat IgE ELISA Kit, 96 tests, Quantitative

300-190-CGE 1 kit
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Pig IgM ELISA Kit, 96 tests, Quantitative

9080 1 kit
EUR 854.4

Human Citrulline (CIT) ELISA Kit, 96 tests

100-320-CIT 1 kit
EUR 1448.4

Dog IgG ELISA Kit, 96 tests, Quantitative

400-100-DGG 1 Kit
EUR 781.2

Dog IgM ELISA Kit, 96 tests, Quantitative

400-170-DGM 1 Kit
EUR 781.2

Dog IgA ELISA Kit, 96 tests, Quantitative

400-180-DGA 1 Kit
EUR 854.4

Dog IgE ELISA Kit, 96 tests, Quantitative

400-190-DGE 1 Kit
EUR 854.4

Rat IgG1 ELISA Kit, 96 tests, Quantitative

6430 1 Kit
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Rat VEGF ELISA Kit, 96 tests, quantitative

200-840-VER 1 kit
EUR 927.6

Goat IgG ELISA Kit, 96 tests, Quantitative

7520 1 kit
EUR 781.2

Goat IgM ELISA Kit, 96 tests, Quantitative

7530 1 kit
EUR 927.6

Goat IgA ELISA Kit, 96 tests, Quantitative

7540 1 kit
EUR 1000.8

Goat IgE ELISA Kit, 96 tests, Quantitative

7550 1 kit
EUR 1000.8

Vasopressin ELISA Kit, 96 tests, Quantitative

10800 1 Kit
EUR 927.6

Protein-G (HCPs) ELISA Kit, 480 tests, Quantitative

800-120-PRG-5 1 pk
EUR 3714

Human Anti-C1q IgG ELISA Kit, 96 tests

2950 1 kit
EUR 854.4

Mouse IgA ELISA Kit, 96 tests, Quantitative

6310 1 kit
EUR 781.2

Mouse IgG ELISA Kit, 96 tests, Quantitative

6320 1 kit
EUR 781.2

Mouse IgE ELISA Kit, 96 tests, Quantitative

6370 1 Kit
EUR 781.2

Mouse IgM ELISA Kit, 96 tests, Quantitative

6380 1 Kit
EUR 781.2

Rat IgG2a ELISA Kit, 96 tests, Quantitative

6440 1 Kit
EUR 578.4

Rat IgG2b ELISA Kit, 96 tests, Quantitative

6450 1 Kit
EUR 634.8

Human IgM ELISA Kit, 96 tests, Quantitative

1760 1 Kit
EUR 781.2

Human IgA ELISA Kit, 96 tests, Quantitative

1780 1 kit
EUR 781.2

Human IgG ELISA Kit, 96 tests, Quantitative

1750 1 Kit
EUR 781.2

Sheep IgG ELISA Kit, 96 tests, Quantitative

7620 1 Kit
EUR 781.2

Sheep IgM ELISA Kit, 96 tests, Quantitative

7630 1 kit
EUR 854.4

Sheep IgA ELISA Kit, 96 tests, Quantitative

7640 1 kit
EUR 1000.8

Sheep IgE ELISA Kit, 96 tests, Quantitative

7650 1 kit
EUR 1000.8

Horse IgA ELISA Kit, 96 tests, Quantitative

7720 1 kit
EUR 854.4

Horse IgG ELISA Kit, 96 tests, Quantitative

7730 1 kit
EUR 854.4

Horse IgM ELISA Kit, 96 tests, Quantitative

7740 1 kit
EUR 854.4

Horse IgE ELISA Kit, 96 tests, Quantitative

7750 1 kit
EUR 927.6

Camel IgG ELISA Kit, 96 tests, Quantitative

7820 1 kit
EUR 854.4

Homocysteine ELISA kit, 96 tests, Quantitative

0370-HCY 1 kit
EUR 927.6

Prostacyclin ELISA Kit, 96 tests, Quantitative

10785 1 Kit
EUR 927.6

Pig Complement Compnent 3 (C3) ELISA Kit, 96 tests, Quantitative

9905 1 Kit
EUR 927.6

Mouse Free Testosterone ELISA Kit, 96 tests, Quantitative

9295 1 Kit
EUR 927.6

Mouse IgG1 ELISA Kit, 96 tests, Quantitative

6330 1 kit
EUR 781.2

Mouse IgG3 ELISA Kit, 96 tests, Quantitative

6360 1 kit
EUR 781.2

Rabbit IgA ELISA Kit, 96 tests, Quantitative

6510 1 kit
EUR 927.6

Rabbit IgM ELISA Kit, 96 tests, Quantitative

6580 1 kit
EUR 708

Monkey IgA ELISA Kit, 96 tests, Quantitative

7010 1 Kit
EUR 854.4

Vitamin A ELISA Kit, 96 tests, Quantitative

10760 1 Kit
EUR 927.6

Vitamin B1 ELISA Kit, 96 tests, Quantitative

10765 1 Kit
EUR 927.6

Vitamin C ELISA Kit, 96 tests, Quantitative

10770 1 Kit
EUR 927.6

Vitamin E ELISA Kit, 96 tests, Quantitative

10775 1 Kit
EUR 927.6

Bovine IgG ELISA Kit, 96 tests, Quantitative

8010 1 Kit
EUR 781.2

Turkey IgG ELISA Kit, 96 tests, Quantitative

8020 1 kit
EUR 781.2

Bovine IgA ELISA Kit, 96 tests, Quantitative

8075 1 Kit
EUR 854.4

Bovine IgM ELISA Kit, 96 tests, Quantitative

8080 1 Kit
EUR 854.4

Horse Fab2 ELISA Kit, 96 tests, Quantitative

7710-Fab 1 kit
EUR 854.4

Mouse VEGF ELISA Kit, 96 tests, Quantitative

100-230-VEM 1 Kit
EUR 854.4

Human CCL2 ELISA Kit, 96 tests, Quantitative

HCC-0L2-105 1 kit
EUR 578.4

Human CCL3 ELISA Kit, 96 tests, Quantitative

HCC-0L3-110 1 kit
EUR 578.4

Human CCL4 ELISA Kit, 96 tests, Quantitative

HCC-0L4-115 1 kit
EUR 578.4

Human CD93 ELISA Kit, 96 tests, Quantitative

HCD-093-120 1 kit
EUR 578.4

Mouse CCL2 ELISA Kit, 96 tests, Quantitative

MCC-0L2-100 1 kit
EUR 578.4

Mouse CCL3 ELISA Kit, 96 tests, Quantitative

MCC-0L3-100 1 kit
EUR 607.2

Mouse Beta-defensin 3 (Defb3) ELISA Kit, 96 tests, Quantitative

9175 1 Kit
EUR 1074

Rat Complement Component 3 (C3) ELISA Kit, 96 tests, Quantitative

9400 1 Kit
EUR 927.6

Nori® Human CRP POCT Systems-25 Tests

GR220008 25 Tests
EUR 299

Nori® Human ANP POCT Systems-25 Tests

GR220010 25 Tests
EUR 618

Nori® Human ST2 POCT Systems-25 Tests

GR220016 25 Tests
EUR 618

Mouse IgG2a ELISA Kit, 96 tests, Quantitative

6340 1 kit
EUR 781.2

Mouse IgG2b ELISA Kit, 96 tests, Quantitative

6350 1 kit
EUR 781.2

Rat Albumin ELISA Kit, 96 tests, Quantitative

6400 1 kit
EUR 781.2

Chicken IgM ELISA Kit, 96 tests, Quantitative

6040 1 kit
EUR 781.2

Dog Albumin ELISA Kit, 96 tests, Quantitative

7000-50 1 kit
EUR 781.2

Vitamin B12 ELISA kit, 96 tests, Quantitative

0340-B12 1 Kit
EUR 927.6

D-Lactate ELISA Kit, 96 tests, Quantitative

10845 1 Kit
EUR 927.6

Protein-A ELISA Kit, 96 tests, Quantitative

800-110-PRA 1 kit
EUR 927.6

Pig Insulin ELISA Kit, 96 tests, Quantitative

10420 1 Kit
EUR 927.6

Human CXCL3 ELISA Kit, 96 tests, Quantitative

HCXC-003-100 1 kit
EUR 578.4

Human CXCL9 ELISA Kit, 96 tests, Quantitative

HCXC-090-100 1 kit
EUR 578.4

Mouse CXCL3 ELISA Kit, 96 tests, Quantitative

MCXC-003-100 1 kit
EUR 578.4

Corticosterone ELISA Kit, 96 tests, Quantitative

CRS-100 1 kit
EUR 854.4

Mouse Primary Antibody (A+G+M) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80150 1 Kit
EUR 781.2

Rat Primary Antibody (A+G+M) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80155 1 Kit
EUR 781.2

Rabbit Primary Antibody (A+G+M) detection and titration and titration ELISA kit, Qualitative (sufficient for 500-1000 tests)

80160 1 Kit
EUR 781.2

Goat Insulin ELISA Kit, 96 tests, Quantitative

10730 1 Kit
EUR 927.6

The tool quality metrics have been disseminated through publications and through arrayQualityMetrics software package. Within the framework provided by the Ontology for Biomedical Investigations, ontology developed to describe the transformation of the data, and software ontology developed for gene expression analysis software. In addition, the consortium has advocated for the development and use of an external reference standard in microarray hybridization and create Molecular Methods (MolMeth) database, which provides the main source for the methods and protocols focusing on microarray-based technology.

Trevor

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