Laboratory for Genomics and Bioinformatics
Lee H. Pratt
Marie-Michèle
Cordonnier-Pratt
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Laboratory for Genomics and Bioinformatics |
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Lee H. Pratt |
Marie-Michèle
Cordonnier-Pratt
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| Projects | People | Laboratory | Education | Protocols | Acknowledgments | Links |
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The links in the next row provide more detail
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| Library | Brief description | Long description | Library construction | Combined genotype code | Number of genotypes in library | Genus | Species | Breed or line | Genotype name | Genus common name | Species common name | Individual ID | Individual name | Comments regarding species | Comments regarding breed or line | genus_code | sp_code | gt_gen_code | gt_code |
| APL1 | Liver | description | comments | A008 | 1 | Equus | Equus caballus | thoroughbred | thoroughbred_1 | Horse | horse | comments | 2 | 5 | 11 | 11 | |||
| LeukoN1 | Unstimulated peripheral blood leukocytes N1 | description | comments | A023 | 1 | Equus | Equus caballus | Belgian draft | Belgian draft_1 | Horse | horse | unknown 8-year-old | comments | 2 | 5 | 15 | 15 | ||
| LeukoN2 | Unstimulated peripheral blood leukocytes N2 | description | comments | A024 | 1 | Equus | Equus caballus | thoroughbred | thoroughbred_2 | Horse | horse | unknown 27-year-old | Hampton | comments | 2 | 5 | 11 | 44 | |
| LeukoN3 | Unstimulated peripheral blood leukocytes N3 | description | comments | A025 | 1 | Equus | Equus caballus | Tennesee walking horse | Tennesee walking horse_1 | Horse | horse | uknown 11-year-old | Perfectly Charming | comments | 2 | 5 | 16 | 16 | |
| LeukoN4 | Unstimulated peripheral blood leukocytes N4 | description | comments | A026 | 1 | Equus | Equus caballus | Polish Arabian | Polish Arabian_1 | Horse | horse | Etienne | Etienne | comments | 2 | 5 | 42 | 42 | |
| LeukoN5 | Unstimulated peripheral blood leukocytes N5 | description | comments | A027 | 1 | Equus | Equus caballus | Dartmoor Pony | Dartmoor Pony_1 | Horse | horse | Cahoots | comments | 2 | 5 | 43 | 43 | ||
| LeukoN6 | Unstimulated peripheral blood leukocytes N6 | description | comments | A028 | 1 | Equus | Equus caballus | quarterhorse | quarterhorse_2 | Horse | horse | Bear | comments | 2 | 5 | 13 | 46 | ||
| LeukoS1 | Stimulated peripheral blood leukocytes S1 | description | comments | A023 | 1 | Equus | Equus caballus | Belgian draft | Belgian draft_1 | Horse | horse | unknown 8-year-old | comments | 2 | 5 | 15 | 15 | ||
| LeukoS2 | Stimulated peripheral blood leukocytes S2 | description | comments | A024 | 1 | Equus | Equus caballus | thoroughbred | thoroughbred_2 | Horse | horse | unknown 27-year-old | Hampton | comments | 2 | 5 | 11 | 44 | |
| LeukoS3 | Stimulated peripheral blood leukocytes S3 | description | comments | A025 | 1 | Equus | Equus caballus | Tennesee walking horse | Tennesee walking horse_1 | Horse | horse | uknown 11-year-old | Perfectly Charming | comments | 2 | 5 | 16 | 16 | |
| LeukoS4 | Stimulated peripheral blood leukocytes S4 | description | comments | A026 | 1 | Equus | Equus caballus | Polish Arabian | Polish Arabian_1 | Horse | horse | Etienne | Etienne | comments | 2 | 5 | 42 | 42 | |
| LeukoS5 | Stimulated peripheral blood leukocytes S5 | description | comments | A027 | 1 | Equus | Equus caballus | Dartmoor Pony | Dartmoor Pony_1 | Horse | horse | Cahoots | comments | 2 | 5 | 43 | 43 | ||
| LeukoS6 | Stimulated peripheral blood leukocytes S6 | description | comments | A028 | 1 | Equus | Equus caballus | quarterhorse | quarterhorse_2 | Horse | horse | Bear | comments | 2 | 5 | 13 | 46 | ||
| MLN1 | Lymph nodes | description | comments | A009 | 4 | Equus | Equus caballus | quarterhorse | quarterhorse_3 | Horse | horse | comments | 2 | 5 | 13 | 47 | |||
| MLN1 | Lymph nodes | description | comments | A009 | 3 | Equus | Equus caballus | quarterhorse | quarterhorse_1 | Horse | horse | unknown | comments | 2 | 5 | 13 | 13 | ||
| MLN1 | Lymph nodes | description | comments | A009 | 2 | Equus | Equus caballus | standardbred | standardbred_1 | Horse | horse | unknown | comments | 2 | 5 | 12 | 12 | ||
| MLN1 | Lymph nodes | description | comments | A009 | 1 | Equus | Equus caballus | thoroughbred | thoroughbred_3 | Horse | horse | unknown | comments | 2 | 5 | 11 | 45 | ||
| MLN1 | Lymph nodes | description | comments | A009 | 5 | Equus | Equus caballus | quarterhorse | quarterhorse_4 | Horse | horse | comments | 2 | 5 | 13 | 48 | |||
| MONO1 | Monocytes | description | comments | A005 | 1 | Equus | Equus caballus | Appaloosa | single Appaloosa | Horse | horse | comments | 2 | 5 | 17 | 17 | |||
| HESC2 | NIH_MGC_258 | description | comments | A035 | 1 | Homo | Homo sapiens | Embryonic stem cells | Embryonic stem cells_2 | human | human | NDAM1170/1171 | NIH_MGC_258/259 | comments | 26 | 28 | 52 | 89 | |
| HESC3 | NIH_MGC_260 | description | comments | A036 | 1 | Homo | Homo sapiens | Embryonic stem cells | Embryonic stem cells_3 | human | human | NDAM1172/1173 | NIH_MGC_260/261 | comments | 26 | 28 | 52 | 90 | |
| HESC4 | NIH_MGC_262 | description | comments | A037 | 1 | Homo | Homo sapiens | Embryonic stem cells | Embryonic stem cells_4 | human | human | NDAM1174/1175 | NIH_MGC_262/263 | comments | 26 | 28 | 52 | 91 | |
| G5Ab4 | G5 antibody-treated trophants | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| G5Th3 | G5 theronts: 1.25-3 kb fraction | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| G5Th4 | G5 theronts: 0.8-1.25 kb fraction | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| G5Th5 | G5 theronts: 3-8 kb fraction | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| G5ThAmp1 | G5 theronts: amplified library | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| G5To3 | G5 tomites: 1.25 - 3 kb fraction | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| G5To4 | G5 tomites: 3 to 8 kb fraction | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| G5To5 | G5 tomites: mixed sizes | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| INIT1 | Trophonts | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| INIT2 | G5 trophont cDNA (INIT2) | description | comments | A006 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | G5 | G5 | Ich | Ich | comments | 4 | 6 | 21 | 21 | |||
| NY4Th2 | NY4 theronts | description | comments | A039 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | NY4 | NY4 | Ich | Ich | comments | 4 | 6 | 132 | 109 | |||
| NY4ThAmp1 | NY4 theronts: amplified library | description | comments | A039 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | NY4 | NY4 | Ich | Ich | comments | 4 | 6 | 132 | 109 | |||
| NY4Tr1 | NY4 trophonts (NY4Tr1) | description | comments | A039 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | NY4 | NY4 | Ich | Ich | comments | 4 | 6 | 132 | 109 | |||
| NY4Tr2 | NY4 trophants (NY4Tr2) | description | comments | A039 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | NY4 | NY4 | Ich | Ich | comments | 4 | 6 | 132 | 109 | |||
| NY4Tr3 | NY4 Trophonts | description | comments | A039 | 1 | Ichthyophthirius | Ichthyophthirius multifiliis | NY4 | NY4 | Ich | Ich | comments | 4 | 6 | 132 | 109 | |||
| COLD1 | Root cold | description | comments | A029 | 1 | Pinus | Pinus taeda | CCLONES | CCLONES 40430 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 61 | |||
| COLD1 | Root cold | description | comments | A029 | 3 | Pinus | Pinus taeda | CCLONES | CCLONES 43608 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 63 | |||
| COLD1 | Root cold | description | comments | A029 | 2 | Pinus | Pinus taeda | CCLONES | CCLONES 41586 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 62 | |||
| FLD1 | Root flooded | description | comments | A029 | 3 | Pinus | Pinus taeda | CCLONES | CCLONES 43608 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 63 | |||
| FLD1 | Root flooded | description | comments | A029 | 1 | Pinus | Pinus taeda | CCLONES | CCLONES 40430 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 61 | |||
| FLD1 | Root flooded | description | comments | A029 | 2 | Pinus | Pinus taeda | CCLONES | CCLONES 41586 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 62 | |||
| GEO1 | Root gravity | description | comments | A029 | 3 | Pinus | Pinus taeda | CCLONES | CCLONES 43608 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 63 | |||
| GEO1 | Root gravity | description | comments | A029 | 2 | Pinus | Pinus taeda | CCLONES | CCLONES 41586 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 62 | |||
| GEO1 | Root gravity | description | comments | A029 | 1 | Pinus | Pinus taeda | CCLONES | CCLONES 40430 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 61 | |||
| GEO2 | Root gravity | description | comments | A032 | 1 | Pinus | Pinus taeda | CCLONES | CCLONES 40430 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 61 | |||
| GEO2 | Root gravity | description | comments | A032 | 2 | Pinus | Pinus taeda | CCLONES | CCLONES 41586 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 62 | |||
| HEAT1 | Root at 37 C for 24 hr | description | comments | A029 | 2 | Pinus | Pinus taeda | CCLONES | CCLONES 41586 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 62 | |||
| HEAT1 | Root at 37 C for 24 hr | description | comments | A029 | 1 | Pinus | Pinus taeda | CCLONES | CCLONES 40430 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 61 | |||
| HEAT1 | Root at 37 C for 24 hr | description | comments | A029 | 3 | Pinus | Pinus taeda | CCLONES | CCLONES 43608 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 63 | |||
| NDL1 | Needles control | description | comments | A029 | 1 | Pinus | Pinus taeda | CCLONES | CCLONES 40430 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 61 | |||
| NDL1 | Needles control | description | comments | A029 | 3 | Pinus | Pinus taeda | CCLONES | CCLONES 43608 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 63 | |||
| NDL1 | Needles control | description | comments | A029 | 2 | Pinus | Pinus taeda | CCLONES | CCLONES 41586 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 62 | |||
| NDL2 | Needles control 2 | description | comments | A029 | 1 | Pinus | Pinus taeda | CCLONES | CCLONES 40430 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 61 | |||
| NDL2 | Needles control 2 | description | comments | A029 | 2 | Pinus | Pinus taeda | CCLONES | CCLONES 41586 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 62 | |||
| NDL2 | Needles control 2 | description | comments | A029 | 3 | Pinus | Pinus taeda | CCLONES | CCLONES 43608 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 63 | |||
| NXCI | Juvenile compression wood - Sederoff project | A016 | 3 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_3 | Loblloly pine | loblolly pine | Tree 3 6-year-old | comments | 3 | 4 | 18 | 50 | ||||
| NXCI | Juvenile compression wood - Sederoff project | A016 | 1 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_1 | Loblloly pine | loblolly pine | Tree 1 6-year-old | comments | 3 | 4 | 18 | 18 | ||||
| NXCI | Juvenile compression wood - Sederoff project | A016 | 2 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_2 | Loblloly pine | loblolly pine | Tree 2 6-year-old | comments | 3 | 4 | 18 | 49 | ||||
| NXLV | Transitional/mature late wood - Sederoff project | A017 | 1 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_7 | Loblloly pine | loblolly pine | unknown 20-year-old | comments | 3 | 4 | 18 | 54 | ||||
| NXNV | Mature normal wood - Sederoff project | A018 | 1 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_5 | Loblloly pine | loblolly pine | unknown 35-year-old | comments | 3 | 4 | 18 | 52 | ||||
| NXPV | Transitional planings wood - Sederoff project | A019 | 1 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_4 | Loblloly pine | loblolly pine | unknown 10-year-old | comments | 3 | 4 | 18 | 51 | ||||
| NXRV | Root wood - Sederoff project | A020 | 1 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_6 | Loblloly pine | loblolly pine | unknown 12-year-old | comments | 3 | 4 | 18 | 53 | ||||
| NXSI | Juvenile side wood - Sederoff project | A016 | 3 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_3 | Loblloly pine | loblolly pine | Tree 3 6-year-old | comments | 3 | 4 | 18 | 50 | ||||
| NXSI | Juvenile side wood - Sederoff project | A016 | 1 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_1 | Loblloly pine | loblolly pine | Tree 1 6-year-old | comments | 3 | 4 | 18 | 18 | ||||
| NXSI | Juvenile side wood - Sederoff project | A016 | 2 | Pinus | Pinus taeda | Coastal plain loblolly pine from North Carolina | Coastal plain loblolly pine from North Carolina_2 | Loblloly pine | loblolly pine | Tree 2 6-year-old | comments | 3 | 4 | 18 | 49 | ||||
| RTAL1 | Roots plus added aluminum | description | comments | A029 | 1 | Pinus | Pinus taeda | CCLONES | CCLONES 40430 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 61 | |||
| RTAL1 | Roots plus added aluminum | description | comments | A029 | 2 | Pinus | Pinus taeda | CCLONES | CCLONES 41586 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 62 | |||
| RTAL1 | Roots plus added aluminum | description | comments | A029 | 3 | Pinus | Pinus taeda | CCLONES | CCLONES 43608 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 63 | |||
| RTBOR1 | Roots plus added boron | description | comments | A029 | 3 | Pinus | Pinus taeda | CCLONES | CCLONES 43608 | Loblloly pine | loblolly pine | comments | 3 | 4 | 48 | 63 | |||
| RTBOR1 | Roots plus added boron | description |