Laboratory for Genomics and Bioinformatics

 
 

Lee H. Pratt

Marie-Michèle Cordonnier-Pratt
 
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General information about the sorghum project

Naming convention for DNA sequences

JSP sequence viewer - Java ServerPages with searchable or drill-down access to sequences, both sequence and cluster links to Gramene, GenBank links, and cluster information

MAGIC Sequence Viewer - this Java GUI provides phred quality values for each base, identifies vector/adapter, polyT, high quality trimmed length, access to BLAST, ability to download fasta files, 6-frame translations, and more

MAGIC Gene Discovery - this Java GUI provides electronic expression profiles, query functions, contig sequence content, cluster alignments, annotation, and more

Library summaries

BLAST against sorghum ESTs or contigs

Clone and library requests

Sequence processing history


Sorghum


Click on the cartoon to find instructions on the use of the database query and viewing tools available from this page.