Laboratory for Genomics and Bioinformatics

 
 

Lee H. Pratt

Marie-Michèle Cordonnier-Pratt
 
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Pathogen-Infected Plants - Incompatible (PI1)

This cDNA library was prepared from two-week-old sorghum seedlings. These seedlings were inoculated with the incompatible sorghum isolate of Colletotrichum graminicola 48 hours prior to harvest. A special feature of this library is that it should contain genes involved in the juvenile resistant reaction. This library was provided by Drs. Ralph Dean and Rod Wing.

 
 

QPSE16 LenNVE >=100 gives the number of sequences that met our criteria for submission to GenBank. Because more than one sequence was occasionally obtained from a cDNA, the number of non-replicate sequences is also provided.

The average Phred Q16 and Q20 lengths are contiguous; if sequence quality declined, but then improved again, the additional high-quality base calls are not included in these numbers.

The number and proportion unique derives from clustering of all 3' sequences from this one library.