Laboratory for Genomics and Bioinformatics

  
 

Lee H. Pratt
Marie-Michèle Cordonnier-Pratt
  
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Ovary Library (OV1 and OV2)

This cDNA library was prepared from ovaries of varying immature stages harvested from 8-week-old, greenhouse-grown plants.

OV1 is an aliquot of this library prepared from cDNAs of moderate length.
 
 
OV2 is an aliquot of this library prepared from the longest cDNAs.
 
 

QPSE16 LenNVE >=100 gives the number of sequences that met our criteria for submission to GenBank. Because more than one sequence was occasionally obtained from a cDNA, the number of non-replicate sequences is also provided.

The average Phred Q16 and Q20 lengths are contiguous; if sequence quality declined, but then improved again, the additional high-quality base calls are not included in these numbers.

The number and proportion unique derives from clustering of all 3' sequences from this one library.