Lee H. Pratt

General information about the NSF-funded pine project at UGA

General information about the USDA/IFAFS-funded project at UC Davis

Sederoff project home page - provides additional information about project participants, cDNA libraries, and much more (NB - many of the sequences displayed on this web site are from the NSF plant genome project funded through Ron Sederoff, NCSU)

Naming convention for DNA sequences - a clone name consists of the first three parts of a sequence name (cDNA library + block number + well)

JSP sequence viewer - Java ServerPages with searchable or drill-down access to sequences, GenBank links, and cluster information

MAGIC Sequence Viewer - this Java GUI provides phred quality values for each base, identifies vector/adapter, polyT, high quality trimmed length, access to BLAST, ability to download fasta files, 6-frame translations, and much more

MAGIC Gene Discovery - this Java GUI provides electronic expression profiles, query functions, contig sequence content, cluster alignments, annotation, and more

BLAST against pine ESTs

Clone requests