Laboratory for Genomics and Bioinformatics

 
 

Lee H. Pratt

Marie-Michèle Cordonnier-Pratt
 
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Please click on the vertical bar immediately below the red arrow to see more.
Click on the Discovery Rate (Number) tab to view this page.
Click on the Search Contig, Search Subgroup or Search Annotation tab to view these pages.
 
Additional information is provided below the image.


After selecting a cluster run (here Sorghum ALL) this panel opens, although it is blank.  After next clicking on the submit button near the center top this view appears - it will take from many seconds with a high speed connection to several minutes with a modem.  Moving the slider bar to the right brings into view what is seen here.   Each bar represents a cluster of ESTs color-coded by library.  Clicking on a bar brings up a pie chart that provides access to annotation information, contig alignment viewer, and more.  Please click on the bar immediately below the red arrow to see more.  To follow the rate of gene discovery, please click on the "Discovery Rate (Number)" tab above the graphic image.  To view what is available on other query pages please click above on the appropriate button (Search Contig, Search Subgroup, Search Annotation).  The Search Annotation No CTG page is not shown; it is identical to the Search Annotation page except that it retrieves data for all sequences, including 5' ESTs, not just those included in defined clusters.