Laboratory for Genomics and Bioinformatics

 
 

Lee H. Pratt

Marie-Michèle Cordonnier-Pratt
 
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Annotations are available from the MAGIC Database for all clusters and ESTs.  The example used throughout this demonstration of the Gene Discovery tool is annotated here as cysteine proteinase based on a hit to maize.  The list can be sorted by any column (here by Expect value).  Clicking on any row (here the top row) retrieves the BLAST alignment from the database.  Our annotations derive from the non-redundant, well annotated and curated PIR-NREF database.  The best hit is shown irrespective of Expect value - we leave it to the user to determine what is significant.  Nonetheless, data can be sorted in an iterative process by first sorting by any column, selecting rows desired, and then clicking on "Sub Table" to display what has been selected (for further sorting if desired).