Laboratory for Genomics and Bioinformatics

Laboratory for Genomics and Bioinformatics
	Lee H. Pratt	Marie-Michèle Cordonnier-Pratt

The Horse Transcriptome
	This work is a collaboration between our laboratory and that of Drs. James Moore and Michel Vandenplas of the UGA College of Veterinary Medicine. The focus initially is on the production of horse ESTs and an archive of the cDNA clones from which they were obtained. As a growing unigene set is established it will be used to monitor the horse transcriptome in response to endotoxemia. This work was initiated with funding from the UGA College of Veterinary Medicine Experiment Station and is currently funded by the Grayson-Jockey Club Research Foundation.

		Project Summary and Objectives EST Data Summary External Links Naming Convention for DNA Sequences - a clone name consists of the first three parts of a sequence name (cDNA library + block number + well) JSP Sequence Viewer - Java ServerPages with searchable or drill-down access to sequences, GenBank links, and cluster information MAGIC Sequence Viewer - this Java GUI provides phred quality values for each base, identifies vector/adapter, polyT, high quality trimmed length, access to BLAST, ability to create and download fasta files, and more - Java Web Start is required and a link to obtain it is provided MAGIC Gene Discovery - this Java GUI provides electronic expression profiles, query functions, contig sequence content, cluster alignments, annotation, and more Blast Against Horse ESTs Clone Requests
Click on the cartoon to find instructions on the use of the database query and viewing tools available from this page.